PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 143aa    MW: 16584.5 Da    PI: 4.9354
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26570.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.91.7e-5417112297
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 +eqdr+lPianv+r+mk++lP+nakisk+aket+qecvsefisfvtseas+kc++e+rkt+ngdd++walatlGf+dy+ep++ yl++yre+e ++
  KHN26570.1  17 KEQDRLLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYREVEVDH 112
                 89******************************************************************************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5211134IPR009072Histone-fold
SuperFamilySSF471132.79E-3919127IPR009072Histone-fold
PfamPF008082.2E-272286IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.4E-195068No hitNo description
PROSITE patternPS0068505369IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.4E-196987No hitNo description
PRINTSPR006159.4E-1988106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEDSIGGSSS NDNNIIKEQD RLLPIANVGR LMKQILPQNA KISKEAKETM QECVSEFISF  60
VTSEASEKCR KERRKTVNGD DICWALATLG FDDYAEPMRR YLHRYREVEV DHNNKVNLQE  120
RENNSPEEKD DEVFQLSNRG VRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4516107192Transcription factor HapC (Eurofung)
4g92_B4e-4516107192Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617240.11e-104PREDICTED: nuclear transcription factor Y subunit B-5-like isoform X1
SwissprotO822484e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0B2QYD61e-103A0A0B2QYD6_GLYSO; Nuclear transcription factor Y subunit B-5
STRINGGLYMA09G05150.25e-69(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-56nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]